Attach pipeline output files to email notifications
acknowledged
Rob Newman
Flamingo pink Python Many nf-core plugins already support attaching MultiQC reports to pipeline emails, but adding the functionality into Nextflow is still open on the roadmap. Is there a specific pipeline that you want this working, or is this a custom pipeline you are developing?
F
Flamingo pink Python
Rob Newman this is mostly for MultiQC and any other "small" report files that we might be generating that users would like to get from their inbox
Rob Newman
Flamingo pink Python: Good to know. Is this a custom pipeline you are developing? If so, are you able to replicate the functionality of those nf-core plugins that already support attaching MultiQC reports?
F
Flamingo pink Python
Rob Newman I was not aware there are plugins for this already, I will have to look those up, thanks
Rob Newman
Flamingo pink Python: Is there a specific/finite list of output files you would like to see? For example, some output files (like BAMs) can be several GB in size and we don't want to clog up email servers by sending large files like this to workflow recipients.
Rob Newman
acknowledged