B
Burgundy Halibut
We have Nextflow pipelines in a monorepo (
main.nf
is not at root of repo), and have been using
tw pipelines add
to deploy pipelines automatically. However, even though the
tower.yml
file is located adjacent to
main.nf
, it is not picked up by the command. Unlike the
nextflow_schema.json
which can be specified via the argument
--schema-name
,
tower.yml
does not have an argument to specify the path.
It is probably better to have arguments to specify all of the required files (
nextflow.config
,
main.nf
,
nextflow_schema.json
,
tower.yml
).
Currently we are manually copying the
tower.yml
file contents in the GUI after pipeline deployment, resulting in the inability to deploy automatically.